All times are given in Central European Summer Time (CEST) using the standard 24 hour clock. ⚡ denotes a lightning talk (10 minutes, including Q&A). 🎞️ denotes a long talk (20 minutes, including Q&A).
See here for information about pre-conference workshops, occurring both on Sunday evening (the day before the conference) and on Monday (the morning before the conference).
Standards 1 (Monday, April 24th, 16.30-18.00)
Session Chair: Frédérique Lisacek (orcid:0000-0002-0948-4537)
| Time (CEST) | Title |
|---|---|
| 16.30-16.50 |
🎞️
Human-pathogen interaction networks: IMEx’s approach on the contextual metadata of the experimental evidence. Kalpana Panneerselvam |
| 16.50-17.10 |
🎞️
Gene Ontology Causal Activity Models (GO-CAMs) for human biology Patrick Masson |
| 17.10-17.30 |
🎞️
The Knowledge Graph Development Kit David Osumi-Sutherland |
| 17.30-17.40 |
⚡
ICGC-ARGO Data Submission Workflow - Integration of data validation and submission to accelerate the data curation and improve the data quality Qian Xiang |
| 17.40-17.50 |
⚡
Developing Standards for Biocuration & Interoperability of Genetic Variation Data in Agricultural Research Marcela Tello-Ruiz |
| 17.50-18.00 |
⚡
Multiplexed scRNA-seq Experiments in Biocuration Yalan Bi |
FAIR 1 (Tuesday, April 25th, 10.00-10.30)
Session Chair: Deepak R. Unni (orcid:0000-0002-3583-7340)
| Time (CEST) | Title |
|---|---|
| 10.00-10.10 |
⚡
APICURON: standardizing attribution of biocuration activity to promote engagement Federica Quaglia |
| 10.10-10.20 |
⚡
scFAIR: Standardization and stewardship of single-cell metadata Frederic B. Bastian |
| 10.20-10.30 |
⚡
Resolving code names to structures from the medicinal chemistry literature: not as FAIR as it should be Christopher Southan |
FAIR 2 (Tuesday, April 25th, 11.00-12.30)
Session Chair: Deepak R. Unni (orcid:0000-0002-3583-7340)
| Time (CEST) | Title |
|---|---|
| 11.00-11.20 |
🎞️
GigaDB: Utilising ontologies to curate data publications Christopher Hunter |
| 11.20-11.40 |
🎞️
KG-IDG: A FAIR Knowledge Graph for Illuminating the Druggable Genome J. Harry Caufield |
| 11.40-12.00 |
🎞️
A 20 year perspective on FAIR and TRUST-worthy Human Disease Knowledge Representation. Lynn M Schriml |
| 12.00-12.10 |
⚡
FAIR Wizard: Making the FAIRification process accessible Wei Kheng Teh |
| 12.10-12.20 |
⚡
Providing Expanded Contextual Metadata for Biological Samples using Both Geographic and Taxonomic Factors Peter Woollard |
| 12.20-12.30 |
⚡
Making expert curated knowledge graphs FAIR Jerven Bolleman |
Applications 1 (Tuesday, April 25th, 13.30-14.30)
Session Chair: Philippe Le Mercier (orcid:0000-0001-8528-090X)
| Time (CEST) | Title |
|---|---|
| 13.30-13.50 |
🎞️
Biocuration in DisProt, the manually curated database for intrinsically disordered proteins Maria Victoria Nugnes |
| 13.50-14.10 |
🎞️
The Comprehensive Antibiotic Resistance Database - Curating the Global Resistome Brian Alcock |
| 14.10-14.30 |
🎞️
Annotation of biologically relevant ligands in UniProtKB using ChEBI Elisabeth Coudert |
Applications 2 (Tuesday, April 25th, 14.45-15.45)
Session Chair: Michael Baudis (orcid:0000-0002-9903-4248)
| Time (CEST) | Title |
|---|---|
| 14.45-14.55 |
⚡
The landscape of microRNA interactions annotation in IMEx: analysis of three rare disorders as case study Simona Panni |
| 14.55-15.05 |
⚡
Medical Action Ontology (MAxO) development and tool implementation for the annotation of Rare Disease (RD) Leigh C Carmody |
| 15.05-15.15 |
⚡
Improved Insights into the SABIO-RK Database via Visualization Dorotea Dudaš |
| 15.15-15.25 |
⚡
The Human Microbiome Drug Metabolism (HMDM) Database Amogelang Raphenya |
| 15.25-15.35 |
⚡
Phenopackets for curated repository data over Beacon v2 Progenetix database Ziying Yang |
| 15.35-15.45 |
⚡
Unifying Protein Complex Curation across the Diversity of Species Sandra Orchard |
AI and Text Mining 1 (Tuesday, April 25th, 13.30-14.30)
Session Chair: Jennifer Harrow (orcid:0000-0003-0338-3070)
| Time (CEST) | Title |
|---|---|
| 13.30-13.50 |
🎞️
ACKnowledge: expanding community curation to include fact extraction using artificial intelligence Valerio Arnaboldi |
| 13.50-14.10 |
🎞️
Machine Learning for Scalable Biocuration Jane Lomax |
| 14.10-14.20 |
⚡
BioKC: a collaborative platform for curation and annotation of molecular interactions Carlos Vega |
| 14.20-14.30 |
⚡
Building a reference dataset of single-cell RNA-Seq data for training Machine-Learning algorithms Anne Niknejad |
AI and Text Mining 2 (Tuesday, April 25th, 14.45-15.45)
Session Chair: Tiago Lubiana (orcid:0000-0003-2473-2313)
| Time (CEST) | Title |
|---|---|
| 14.45-14.55 |
⚡
Curating species descriptions for the digital age Peter Uetz |
| 14.55-15.05 |
⚡
eMIND: Enabling automatic collection of protein variation impacts in Alzheimer’s disease from the literature Samir Gupta |
| 15.05-15.15 |
⚡
Machine-assisted curation of molecular mechanisms using automated knowledge extraction and assembly Benjamin M. Gyori |
| 15.15-15.25 |
⚡
Assessing the Use of Supplementary Materials to Improve Genomic Variant Discovery Emilie Pasche |
| 15.25-15.35 |
⚡
A Framework for Assisting MeSH Vocabulary Development at the National Library of Medicine: Reliably Identifying Literature Containing New Chemical Substances Rezarta Islamaj |
| 15.35-15.45 |
⚡
Predicting protein metal binding sites with artificial intelligence and machine learning in UniProt Rossana Zaru |
Community 1 (Wednesday, April 26th, 10.00-10.30)
Session Chair: Monica Munoz-Torres (orcid:0000-0001-8430-6039)
| Time (CEST) | Title |
|---|---|
| 10.00-10.10 |
⚡
A complete draft human gene functionome from large-scale evolutionary modeling and experimental Gene Ontology annotations Marc Feuermann |
| 10.10-10.20 |
⚡
Towards making sense of glycan-mediated protein-protein interactions Catherine Hayes |
| 10.20-10.30 |
⚡
Wikidata as a tool for biocuration of cell types Tiago Lubiana |
Community 2 (Wednesday, April 26th, 13.00-14.30)
Session Chair: Monica Munoz-Torres (orcid:0000-0001-8430-6039)
| Time (CEST) | Title |
|---|---|
| 13.00-13.20 |
🎞️
Promoting the longevity of curated scientific resources through open code, open data, and public infrastructure Charles Tapley Hoyt |
| 13.20-13.40 |
🎞️
Single Cell Expression Atlas and FlyBase - the Fly Cell Atlas Anatomograms – where data meets art Nancy George |
| 13.40-14.00 |
🎞️
Leveraging crowdsourcing and curation prioritisation for maintenance of clinical gene panels Arina Puzriakova |
| 14.00-14.10 |
⚡
Community SARS-CoV-2 Curation Driven Emergent Experiences - Increased Curation Efficiency and Learned Lessons for the Future Marc Gillespie |
| 14.10-14.20 |
⚡
wwPDB Biocuration: Supporting Advances in Science and Technology Irina Persikova |
| 14.20-14.30 |
⚡
Accessing UK Biobank-derived data through the AZ PheWAS portal, with reassigned phenotypic ICD10 codes. Jennifer Harrow |